研究業績（論文・著書等）



2014年

　
  1. Y. Yamazaki, T. Nagata, A. Terakita, H. Kandori, Y. Shichida, Y. Imamoto
    Intramolecular Interactions That Induce Helical Rearrangement upon Rhodopsin Activation : LIGHT-INDUCED STRUCTURAL CHANGES IN METARHODOPSIN IIa PROBED BY CYSTEINE S-H STRETCHING VIBRATIONS
    J. Biol. Chem. 289,13792-13800(2014)
  2. Y. Kobayashi, H. Tsutsumi, T. Abe, K. Ikeda, Y. Tashiro, S. Unzai, H. Kamikubo, M. Kataoka, H. Hiroaki, D. Hamada
    Decreased amyloidogenicity by mutational modulation of surface properties of the immunoglobulin light chain BRE variable domain
    Biochemistry 53(31), 5162-5173(2014)
  3. M. Deshpande, P. Parui, H. Kamikubo, M. Yamanaka, S. Nagao, H. Komori, M. Kataoka, Y. Higuchi, S. Hirota
    Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer
    Biochemistry 53(28), 4696-4703(2014)
  4. H. Nakagawa, Y. Yonetani, K. Nakajima, S. Ohira-Kawamura, T.Kikuchi, Y. Inamura, M. Kataoka, H. Kono
    Local Dynamics Coupled to Hydration Water Determines DNA-sequence Dependent Deformability
    Physical Reiew E, (2014)
  5. D. Novitasari, H. Kamikubo, Y. Yamazaki, M. Yamaguchi, M. Kataoka
    Excited-State Proton Transfer in Fluorescent Photoactive Yellow Protein Containing 7-Hydroxycoumarin
    Advanced Materials Research 896, 85-88 (2014)

2013年

  1. Y. Yamazaki, T. Nagata, A. Terakita, H. Kandori, Y. Shichida, Y. Imamoto
    Mapping of the local environmental changes in proteins by cysteine scanning
    Biophysics 10, 1-7(2013)
  2. PP. Parui, MS. Deshpande, S. Nagao, H. Kamikubo, H. Komori, Y. Higuchi, M. Kataoka, S. Hirota
    Formation of oligomeric cytochrome c during folding by intermolecular hydrophobic interaction between N- and C-terminal α-helices
    Biochemistry 52, 8732-8744(2013)
  3. 片岡幹雄
    揺らぎ・ダイナミクスと生体機能－物理化学的視点から見た生体分子(寺嶋正秀編）
    化学同人,P.136-144, P.204-211 (2013)
  4. M. Hamaguchi, H. Kamikubo, K. N. Suzuki, Y. Hagihara, I. Yanagihara, I. Sakata, M. Kataoka, D. Hamada
    Structural Basis of α-Catenin Recognition by EspB from Enterohaemorrhagic E. coli Based on Hybrid Strategy Using Low-Resolution Structural and Protein Dissection
    PLoS One 8, e71618 (2013)
  5. N. Inoue, D. Hamada, H. Kamikubo, K. Hirata, M. Kataoka, M. Yamamoto, M. Ikawa, M. Okabe, Y. Hagihara
    Molecular dissection of IZUMO1, a sperm protein essential for sperm-egg fusion
    Development 140, 3221-3229 (2013)
  6. J. Yuasa, T. Ohno, H. Tsumatori, R. Shiba, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
    Fingerprint signatures of lanthanide circularly polarized luminescence from proteins covalently labeled by a β-diketonate europium(III) chelate
    Chem. Comm. 49, 4604-4606 (2013)
  7. J. Uewaki, H. Kamikubo, J. Kurita, N. Hiroguchi, H. Moriuchi, M. Yoshida, M. Kataoka, N. Utsunomiya-Tate, S. Tate
    Preferential domain orientation of HMGB2 determined by weak intramolecular interactions mediated by the interdomain linker
    Chem. Phys. 419, 212-223 (2013)
  8. Y. Kita, H. Kamikubo, M. Kataoka, M. Tachikawa
    Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with multi-component density functional theory
    Chem. Phys.419, 50-53 (2013)
  9. T. J. Pool, N. A. Oktaviani, H. Kamikubo, M. Kataoka, F. A. A. Mulder
    1H, 13C, and 15N resonance assignment of photoactive yellow protein
    Biomol. NMR Assign. 7, 97-100 (2013)
  10. W. Chung, K. Nobusawa, H. Kamikubo, M. Kataoka, M. Fujiki, M. Naito
    Time-resolved observation of chiral-index-selective wrapping on single-walled carbon nanotube with non-aromatic polysilane
    J. Am. Chem. Soc. 135, 2374-2383 (2013)
  11. 上久保裕生，片岡幹雄
    働いているタンパク質の構造を実時間で見た！－次世代構造生物科学への期待
    化学 68, 74-75 (2013)
  12. 上久保裕生
    結晶構造解析と溶液散乱測定から見た光センサー蛋白質の局所構造と全体構造
    日本結晶学会誌 55, 52-57 (2013)

2012年

  1. S. Hirota, M. Ueda, Y. Hayashi, S. Nagao, H. Kamikubo, M. Kataoka
    Maintenance of the secondary structure of horse cytochrome c during the conversion process of monomers to oligomers by addition of ethanol
    J. Biochem. 152, 521-529 (2012)
  2. F. Schotte, H. S. Cho, V. R. I. Kaila, H. Kamikubo, N. Dashdorj, E. R. Henry, T. J. Graber, R. Henning, M. Wulff, G. Hummer, M. Kataoka, P. A. Anfinrud
    Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography
    Proc. Natl. Acad. Sci. USA 109, 19256-19261 (2012)
  3. H. Makyio, M. Ohgi, T. Takei, S. Takahashi, H. Takatsu, Y. Katoh, A. Hanai, T. Ueda, Y. Kanaho, Y. Xie, H.-W. Shin, H. Kamikubo, M. Kataoka, M. Kawasaki, R. Kato, S. Wakatsuki, K. Nakayama
    Structural basis for Arf6–MKLP1 complex formation on the Flemming body responsible for cytokinesis
    EMBO J. 31, 2590-2603 (2012)
  4. N. A. Oktaviani, T. J. Pool, H. Kamikubo, J. Slager, R. M. Sceek, M. Kataoka, F. A. A. Mulder
    Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect 13C NMR spectroscopy
    Biophys. J. 102, 579-586 (2012)
  5. 片岡幹雄
    中性子生物物理学の展開
    波紋 22, 132-138 (2012)
  6. 片岡幹雄
    タンパク質機能の制御技術
    In "ひかりエネルギー革命－グリーンフォトニクス－"（NAISTグリーンフォトニクス研究チーム編著）, pp.91-96，化学同人，京都 (2012)

2011年

  1. D. J. Sindhikara, N. Yoshida, M. Kataoka, F. Hirata
    Solvent penetration in photoactive yellow protein R52Q mutant: a theoretical study
    J. Mol. Liq. 164, 120-122 (2011)
  2. M. Mizuno, H. Kamikubo, M. Kataoka, Y. Mizutani
    Changes in the hydrogen-bond network around the chromophore of photoactive yellow protein in the ground and excited states
    J. Phys. Chem. B 115, 9306-9310 (2011)
  3. R. Shiba, M. Umeyama, S. Tsukasa, H. Kamikubo, Y. Yamazaki, M. Yamaguchi, M. Iwakura, M. Kataoka
    Systematic alanine insertion reveals the essential regions that encode structure formation and activity of dihydrofolate reductase
    Biophysics 7, 1-10 (2011)
  4. A. Tanaka, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
    Size-controlled aggregation of cube-shaped EuS nanocrystals with magneto-optic properties in solution
    Langmuir 27, 104-108 (2011)
  5. M. Kataoka, H. Nakagawa
    Protein dynamics studied by neutron incoherent scattering
    In "Neutrons in Soft Matter" (Eds. T. Imae, T. Kanaya, M. Furusaka, N. Torikai), pp. 517-538, John Wiley, New Jersey (2011)
  6. 片岡幹雄
    生物研究における中性子
    波紋 21, 243-246 (2011)
  7. 中川洋，片岡幹雄
    中性子非弾性散乱による生体高分子ダイナミックスの研究
    高分子 60, 195-196 (2011)

2010年

  1. M. Yamaguchi, T. Ikeda, K. Yamamoto, A. Matsushita, M. Tatsuno, Y. Minami, M. Tani, M. Hangyo
    Discrimination of inflammable liquids by two-dimensional mapping of complex refractive indices in the terahertz range
    Jpn. J. Appl. Phys. 49, 102401 (2010)
  2. H. Nakagawa, M. Kataoka
    Percolation of hydration water as a control of protein dynamics
    J. Phys. Soc. Jpn 79, 083801 (2010)
  3. S. Hirota, Y. Hattori, S. Nagao, M. Taketa, H. Komori, H. Kamikubo, Z. Wang, I. Takahashi, S. Negi, Y. Sugiura, M. Kataoka, Y. Higuchi
    Cytochrome c polymerization by successive domain swapping at the C-terminal helix
    Proc. Natl. Acad. Sci. USA 107, 12854-12859 (2010)
  4. M. Tani, T. Koizumi, H. Sumikura, M. Yamaguchi, K. Yamamoto, M. Hangyo
    Time-domain coherent anti-stokes Raman scattering signal detection for terahertz vibrational spectroscopy using chirped femtosecond pulses
    Appl. Phys. Express 3, 072401 (2010)
  5. A. Tanaka, H. Kamikubo, Y. Doi, Y. Hinatsu, M. Kataoka, T. Kawai, Y. Hasegawa
    Self-assembly and enhanced magnetic properties of three-dimensional superlattice structures composed of cube-shaped EuS nanocrystals
    Chem. Mater. 22, 1776-1781 (2010)
  6. S. Kato, H. Kamikubo, S. Hirano, Y. Yamazaki, M. Kataoka
    Nonlocal interaction responsible for the tertiary structural formation of Staphylococcal nuclease
    Biophys. J. 98, 678-786 (2010)
  7. H. Nakagawa, H. Kamikubo, M. Kataoka
    Effect of conformational states on protein dynamical transition
    Biochim. Biophys. Acta 1804, 27-33 (2010)
  8. M. Kataoka, H. Nakagawa
    Effect of hydration on protein dynamics
    In "Water, The Forgotten Biological Molecule" (Eds. D. Le Bihan, H. Fukuyama), pp. 49-62, Pan Stanford Publishing, Singapore (2010)
  9. 上久保裕生，山口繁生，片岡幹雄
    フォトアクティブイェロープロテインの中性子結晶構造解析
    RADIOISOTOPES 59, 289-297 (2010)
  10. 片岡幹雄
    生体分子の光ナノサイエンス
    In "光ナノ科学への招待"（長谷川靖哉、細川陽一郎、中嶋琢也編）pp. 36-45，化学同人，京都 (2010)
  11. 片岡幹雄
    鍵と鍵穴か、誘導適合か－天然変性タンパク質における認識・結合分子機構の検討
    In "揺らぎと生体機能 (MedicalBio 10月別冊）"（寺嶋正秀監修）pp. 27-31，オーム社，東京 (2010)

2009年

  1. A. Tanaka, Y. Hasegawa, H. Kamikubo, M. Kataoka, T. Kawai
    Self-aggregation of magnetic semiconductor EuS nanocrystals
    Thin Solid Films 518, 870-872 (2009)
  2. P. Changenet-Barret, P. Plaza, M. M. Martin, H. Chosrowjan, S. Taniguchi, N. Mataga, Y. Imamoto, M. Kataoka
    Structural effects on the ultrafast photoisomerization of photoactive yellow protein: Transient absorption spectroscopy of two point mutants
    J. Phys. Chem. C 113, 11605-11613 (2009)
  3. G. Sciaini, M. Harb, S. G. Kruglik, T. Payer, C. T. Hebeisen, F.-J. Meyer zu Heringdorf, M. Yamaguchi, M. Horn-von Hoegen, R. Ernstorfer, R. J. D. Miller
    Electronic acceleration of atomic motions and disordering in bismuth
    Nature 458, 56-59 (2009)
  4. S. Yamaguchi, H. Kamikubo, K. Kurihara, R. Kuroki, N. Niimura, N. Shimizu, Y. Yamazaki, M. Kataoka
    Low-barrier hydrogen bond in photoactive yellow protein
    Proc. Natl. Acad. Sci. USA 106, 440-444 (2009)
  5. M. Kataoka, H. Kamikubo
    Structure of the photointermediate of photoactive yellow protein and the propagataion mechanism of structural change
    In "Water and Biomolecules" (Eds. K. Kuwajima, Y. Goto, F. Hirata, M. Kataoka , M. Terazima), pp. 137-148, Springer-Verlag, Berlin (2009)
  6. 中川洋、片岡幹雄
    非干渉性中性子非弾性散乱で観るタンパク質ダイナミクスの水和効果
    波紋 19, 91-94 (2009)
  7. 片岡幹雄
    イェロープロテインと関連タンパク質
    In "光科学研究の最前線２"（「光科学研究の最前線2」編集委員会編）pp. 208. 強光子場科学研究懇談会，東京 (2009)

2008年

  1. M. Inoue, H. Kamikubo, M. Kataoka, R. Kato, T. Yoshimori, S. Wakatsuki, M. Kawasaki
    Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
    Traffic 9, 2180-2189 (2008)
  2. H. Nakagawa, Y. Joti, A. Kitao, M. Kataoka
    Hydration affects both harmonic and anharmonic nature of protein dynamics
    Biophys. J. 95, 2916-2923 (2008)
  3. M. Onitsuka, H. Kamikubo, Y. Yamazaki, M. Kataoka
    Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutants
    Proteins: Struct. Funct. Bioinformat. 72, 837-847 (2008)
  4. M. Harigai, M. Kataoka, Y. Imamoto
    Interaction between N-terminal loop and β-scaffold of photoactive yellow protein
    Photochem. Photobiol. 84, 1031-1037 (2008)
  5. Y. Imamoto, M. Harigai, T. Morimoto, M. Kataoka
    Low-temperature spectroscopy of Met100Ala mutant of photoactive yellow protein
    Photochem. Photobiol. 84, 970-976 (2008)
  6. H. Kamikubo, T. Koyama, M. Hayashi, K. Shirai, Y. Yamazaki, Y. Imamoto, M. Kataoka
    The photoreaction of the photoactive yellow protein domain in the light sensor histidine kinase Ppr is influenced by the C-terminal domains
    Photochem. Photobiol. 84, 895-902 (2008)
  7. Y. Yamazaki, H. Fukuzumi, H. Kamikubo, M. Kataoka
    Role of the N-terminal region in the function of the photosynthetic bacterium transcription regulator PpsR
    Photochem. Photobiol. 84, 839-844 (2008)
  8. Y. Joti, H. Nakagawa, M. Kataoka, A. Kitao
    Hydration effect on low-frequency protein dynamics observed in simulated neutron scattering spectra
    Biophys. J. 94, 4435-4443 (2008)
  9. S. Yousef, H. Kamikubo, M. Kataoka, R. Kato, S. Wakatsuki
    Miranda cargo-binding domain forms an elongated coiled-coil homodimer in solution: Implications for asymmetric cell division in Drosophila
    Protein Sci. 17, 908-917 (2008)
  10. Y. Imamoto, S. Tatsumi, M. Harigai, Y. Yamazaki, H. Kamikubo, M. Kataoka
    Diverse Roles of Glycine Residues Conserved in Photoactive Yellow Proteins
    Biophys. J. 94, 3620-3628 (2008)
  11. Y. Joti, H. Nakagawa, M. Kataoka, A. Kitao
    Hydration-dependent protein dynamics revealed by molecular dynamics simulation of crystalline Staphylococcal nuclease
    J. Phys. Chem. B 112, 3522-3528 (2008)
  12. Y. Hoshihara, Y. Imamoto, M. Kataoka, F. Tokunaga, M. Terazima
    Conformational changes in the N-terminal region of photoactive yellow protein: A time-resolved diffusion study
    Biophys. J. 94, 2187-2193 (2008)

2007年

  1. Y. Shimomura, H. Kamikubo, Y. Nishi, T. Masako, M. Kataoka, Y. Kobayashi, K. Fukuyama, Y. Takahashi
    Characterization and crystallization of an IscU-type scaffold protein with bound [2Fe 2S] cluster from the Hyperthermophile, Aquifex aeolicus
    J. Biochem. 142, 577-586 (2007)
  2. L. Chavas, S. Torii, H. Kamikubo, M. Kawasaki, K. Ihara, R. Kato, M. Kataoka, T. Izumi, S. Wakatsuki
    Structure of the small GTPase Rab27b shows an unexpected swapped dimer
    Acta Cryst. D 63, 769-779 (2007)
  3. M. Inoue, T. Shiba, K. Ihara, Y. Yamada, S. Hirano, H. Kamikubo, M. Kataoka, M. Kawasaki, R. Kato, K. Nakayama, S. Wakatsuki
    Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1
    Traffic 8, 904-913 (2007)
  4. S. Kawai, T. Nakashima, K. Atsumi, T. Sakai, M. Harigai, Y. Imamoto, H. Kamikubo, M. Kataoka, T. Kawai
    Novel photochromic molecules based on 4,5-dithienyl thiazole with fast thermal bleaching rate
    Chem. Mater. 19, 3479-3483 (2007)
  5. K. Shirai, Y. Yamazaki, H. Kamikubo, Y. Imamoto, M. Kataoka
    Attempt to simplify the amino-acid sequence of photoactive yellow protein with a set of simple rules
    Proteins: Struct. Funct. Bioinformat. 67, 821-833 (2007)
  6. K. Matsuo, Y. Sakurada, R. Yonehara, M. Kataoka, K. Gekko
    Secondary-structure analysis of denatured proteins by vacuum-ultraviolet circular dichroism spectroscopy
    Biophys. J. 92, 4088-4096 (2007)
  7. H. Kamikubo, N. Shimizu, M. Harigai, Y. Yamazaki, Y. Imamoto, M. Kataoka
    Characterization of the solution structure of the M intermediate of photoactive yellow protein using high-angle solution x-ray scattering
    Biophys. J. 92, 3633-3642 (2007)
  8. A. Tokuhisa, Y. Joti, H. Nakagawa, A. Kitao, M. Kataoka
    Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation
    Phys. Rev. E 75, 041912 (2007)
  9. S. Yamaguchi, H. Kamikubo, N. Shimizu, Y. Yamazaki, Y. Imamoto, M. Kataoka
    Preparation of large crystal of photoactive yellow protein for neutron and high resolution crystal structure analysis
    Photochem. Photobiol. 83, 336-338 (2007)
  10. T. Morishita, M. Harigai, Y. Yamazaki, H. Kamikubo, M. Kataoka, Y. Imamoto
    Array of aromatic amino acid side chains located near the chromophore of photoactive yellow protein
    Photochem. Photobiol. 83, 280-285 (2007)
  11. Y. Imamoto, M. Kataoka
    Structure and photoreaction of photoactive yellow protein, a structural prototype of the PAS domain superfamily
    Photochem. Photobiol. 83, 40-49 (2007)
  12. P. Changenet-Barret, P. Plaza, M. M. Martin, H. Chosrowjan, S. Taniguchi, N. Mataga, Y. Imamoto, M. Kataoka
    Role of arginine 52 on the primary photoinduced events in the PYP photocycle
    Chem. Phys. Lett. 434, 320-325 (2007)

2006年

  1. H. Nakagawa, A. Tokuhisa, H. Kamikubo, Y. Joti, A. Kitao, M. Kataoka
    Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations
    Mat. Sci. Eng. A 442, 356-360(2006)
  2. S. Ohnishi, H. Kamikubo, M. Onitsuka, M. Kataoka, D. Shortle
    Conformational preference of polyglycine in solution to elongated structure
    J. Am. Chem. Soc. 128, 16338-16344 (2006)
  3. H. Nakagawa, M. Kataoka, Y. Joti, A. Kitao, A. Tokuhisa, K. Shibata, I. Tsukushi, N. Go
    Hydration-coupled protein boson peak measured by incoherent neutron scattering
    Physica B 385-386, 871-873 (2006)
  4. L.-Y. Yang, M. Harigai, Y. Imamoto, M. Kataoka, T.-I. Ho, E. Andrioukhina, O. Federova, S. Shevyakov, R. S. H. Liu
    Stilbene analogs in Hula-twist photoisomerization
    Photochem. Photobiol. Sci. 5, 874-882 (2006)
  5. M. Harigai, M. Kataoka, Y. Imamoto
    A single CH/π weak hydrogen bond governs stability and photocycle of photoactive yellow protein
    J. Am. Chem. Soc. 128, 10646-10647 (2006)
  6. J. S. Khan, Y. Imamoto, M. Harigai, M. Kataoka, M. Terazima
    Conformational changes of PYP monitored by diffusion coefficient: Effect of N-terminal α-helices
    Biophys. J. 90, 3686-3693 (2006)
  7. N. Shimizu, H. Kamikubo, Y. Yamazaki, Y. Imamoto, M. Kataoka
    The crystal structure of the R52Q mutant demonstrates a role for R52 in chromophore pKa regulation in photoactive yellow protein
    Biochemistry 45, 3542-3547 (2006)
  8. H. Tsuihiji, Y. Yamazaki, H. Kamikubo, Y. Imamoto, M. Kataoka
    Cloning and characterization of nif structural and regulatory genes in the purple sulfur bacterium, Halorhodospira halophila
    J. Biosci. Bioeng. 101, 263-270 (2006)
  9. N. Shimizu, Y. Imamoto, M. Harigai, H. Kamikubo, Y. Yamazaki, M. Kataoka
    pH-Dependent equilibrium between long-lived near-UV intermediates of photoactive yellow protein
    J. Biol. Chem. 281, 4318-4325 (2006)
  10. J. S. Khan, Y. Imamoto, M. Kataoka, F. Tokunaga, M. Terazima
    Time-resolved thermodynamics: Heat capacity change of transient species during photo-reaction of PYP
    J. Am. Chem. Soc. 128, 1002-1008 (2006)
  11. 新村信雄，平井光博，片岡幹雄
    大強度陽子加速器中性子源を活用した生物研究の展望
    生物物理 46, 182-187 (2006)

2005年

  1. K. Ito, H. Kamikubo, N. Yagi, Y. Amemiya
    Correction method and software for image distortion and nonuniform response in charge-coupled device-based X-ray detectors utilizing X-ray image intensifier
    Jpn. J. Appl. Phys. 40, 8684-8691(2005)
  2. J. S. Khan, Y. Imamoto, Y. Yamazaki, M. Kataoka, F. Tokunaga, M. Terazima
    A biosensor in the time domain based on the diffusion coefficient measurement: Intermolecular interaction of an intermediate of photoactive yellow protein
    Anal. Chem. 77, 6625-6629 (2005)
  3. H. Kamikubo, M. Kataoka
    Can the low-resolution structures of photointermediates of bacteriorhodopsin explain their crystal structures?
    Biophys. J. 88, 1925-1931 (2005)
  4. S. Hirano, H. Kamikubo, Y. Yamazaki, M. Kataoka
    Elucidation of information encoded in tryptophan 140 of staphylococcal nuclease
    Proteins: Struct. Funct. Bioinformat. 58, 271-277 (2005)
  5. T. Oka, K. Inoue, M. Kataoka, N. Yagi
    Structural transition of bacteriorhodopsin is preceded by deprotonation of Schiff base: Microsecond time-resolved X-ray diffraction study of purple membrane
    Biophys. J. 88, 436-442 (2005)
  6. 山口敏男，片岡幹雄
    タンパク質と水の中性子散乱
    現代化学 411, 55-60 (2005)
  7. 片岡幹雄
    構造とダイナミクスの実験
    In "タンパク質科学"（後藤祐児，桑島邦博，谷澤克行編）pp. 211-220. 化学同人，京都 (2005)

2004年

  1. Y. Imamoto, M. Harigai, M. Kataoka
    Direct observation of the pH-dependent equilibrium between L-like and M intermediates of photoactive yellow protein
    FEBS Lett. 577, 75-80 (2004)
  2. Y. Okumura, T. Oka, M. Kataoka, Y. Taniguchi, Y. C. Sasaki
    Picometer-scale dynamical observations of individual membrane proteins: The case of bacteriorhodopsin
    Phys. Rev. E 70, 021917 (7 pages) (2004)
  3. S. Yuzawa, K. Ogura, M. Horiuchi, N. Suzuki, Y. Fujioka, M. Kataoka, H. Sumimoto, F. Inagaki
    Solution structure of the tandem Src homology 3 domains of p47phox in an autoinhibited form
    J. Biol. Chem. 279, 29752-29760 (2004)
  4. S. F. El-Mashtoly, M. Unno, M. Kumauchi, N. Hamada, K. Fujiwara, J. Sasaki, Y. Imamoto, M. Kataoka, F. Tokunaga, S. Yamauchi
    Resonance Raman spectroscopy reveals the origin of an intermediate wavelength form in photoactive yellow protein
    Biochemistry 43, 2279-2287 (2004)
  5. H. Nakagawa, H. Kamikubo, I. Tsukushi, T. Kanaya, M. Kataoka
    Protein dynamical heterogeneity derived from neutron incoherent elastic scattering
    J. Phys. Soc. Jpn. 73, 491-495 (2004)
  6. H. Chosrowjan, N. Mataga, S. Taniguchi, M. Unno, H. Kamikubo, Y. Imamoto, M. Kataoka
    Time and frequency domain investigations on ultrafast photoreaction dynamics of photoactive yellow protein
    レーザー研究 32, 114-120 (2004)
  7. 上久保裕生，片岡幹雄
    中性子散乱
    In "バイオ高性能機器・新技術利用マニュアル（蛋白質核酸酵素　増刊 49）" pp. 1681-1686 (2004)

2003年

  1. M. Harigai, Y. Imamoto, H. Kamikubo, Y. Yamazaki, M. Kataoka
    Role of an N-terminal loop in the secondary structural change of photoactive yellow protein
    Biochemistry 42, 13893-13900 (2003)
  2. Y. Imamoto, T. Kuroda, M. Kataoka, S. Shevyakov, G. Krishnamoorthy, R. S. H. Liu
    Photoisomerization by hula twist: 2, 2'-dimethylstilbene and a ring-fused analogue
    Angew. Chem. Int. Ed. 42, 3630-3633 (2003)
  3. Y. Imamoto, C. Tamura, H. Kamikubo, M. Kataoka
    Concentration-dependent tetramerization of bovine visual arrestin
    Biophys. J. 85, 1186-1195 (2003)
  4. M. Arai, M. Kataoka, K. Kuwajima, C. R. Matthews, M. Iwakura
    Effects of the difference in the unfolded-state ensemble on the folding of Escherichia coli dihydrofolate reductase
    J. Mol. Biol. 329, 779-791 (2003)
  5. N. Mataga, H. Chosrowjan, S. Taniguchi, N. Hamada, F. Tokunaga, Y. Imamoto, M. Kataoka
    Ultrafast photoreactions in protein nanospaces as revealed by fs fluorescence dynamics measurements on photoactive yellow protein and related systems
    Phys. Chem. Chem. Phys. 5, 2454-2460 (2003)
  6. M. Kataoka, H. Kamikubo, H. Nakagawa, S. F. Parker, J. C. Smith
    Neutron inelastic scattering as a high-resolution vibrational spectroscopy: New tool for the study of protein dynamics
    Spectroscopy 17, 529-535 (2003)
  7. E. Mano, H. Kamikubo, Y. Imamoto, M. Kataoka
    Comparison of the photochemical reaction of photoactive yellow protein in crystal with reaction in solution
    Spectroscopy 17, 345-353 (2003)
  8. 中川洋，上久保裕生，片岡幹雄
    タンパク質動力学研究における中性子とX線の役割
    波紋 13, 116-119 (2003)

2002年

  1. Y. Imamoto, M. Harigai, N. Shimizu, H. Kamikubo, M. Kataoka
    Structure and photoreaction of photoactive yellow protein
    J. Photosci. 9, 126-129 (2002)
  2. H. Chosrowjan, N. Mataga, S. Taniguchi, Y. Shibata, N. Hamada, F. Tokunaga, Y. Imamoto, M. Kataoka
    The role of vibrational coherency in ultrafast reaction dynamics of PYP
    J. Photosci. 9, 122-125 (2002)
  3. Y. Imamoto, M. Kataoka, R. S. H. Liu
    Mechanistic pathways for the photoisomerization reaction of the anchored, tethered chromophore of the photoactive yellow protein and its mutants
    Photochem. Photobiol. 76, 584-589 (2002)
  4. Y. Imamoto, H. Kamikubo, M. Harigai, N. Shimizu, M. Kataoka
    Light-induced global conformational change of photoactive yellow protein in solution
    Biochemistry 41, 13595-13601 (2002)
  5. S. Hirano, K. Mihara, H. Kamikubo, Y. Yamazaki, Y. Imamoto, M. Kataoka
    Role of C-terminal region of Staphylococcal nuclease for foldability, stability and activity
    Proteins: Struct. Funct. Genet. 49, 255-265 (2002)
  6. K. Takeshita, Y. Imamoto, M. Kataoka, K. Mihara, F. Tokunaga, M. Terazima
    Structural change of site-directed mutants of PYP: New dynamics during pR state
    Biophys. J. 83, 1567-1577 (2002)
  7. N. Shimizu, H. Kamikubo, K. Mihara, Y. Imamoto, M. Kataoka
    Effect of organic anions on the photoreaction of photoactive yellow protein
    J. Biochem. 132, 257-263 (2002)
  8. T. Oka, N. Yagi, F. Tokunaga, M. Kataoka
    Time-resolved X-ray diffraction reveals movement of F helix of D96N bacteriorhodopsin during M-MN transition at neutral pH
    Biophys. J. 82, 2610-2616 (2002)
  9. K. Takeshita, Y. Imamoto, M. Kataoka, F. Tokunaga, M. Terazima
    Thermodynamic and transport properties of intermediate states of the photocyclic reaction of photoactive yellow protein
    Biochemistry 41, 3037-3048 (2002)
  10. N. Mataga, H. Chosrowjan, Y. Shibata, Y. Imamoto, M. Kataoka, F. Tokunaga
    Ultrafast photoinduced reaction dynamics of photoactive yellow protein (PYP): Observation of coherent oscillations in the femtosecond fluorescence decay dynamics
    Chem. Phys. Lett. 352, 220-225 (2002)
  11. 清水伸隆，今元泰，片岡幹雄
    結晶構造解析によるイエロープロテインの光反応モデルとその問題点
    生物物理 42, 162-167 (2002)
  12. 上久保裕生，片岡幹雄
    光駆動プロトンポンプの一方向プロトン輸送機構
    応用光学 2, 1-6 (2002)

2001年

  1. Y. Imamoto, K. Mihara, F. Tokunaga, M. Kataoka
    Spectroscopic characterization of the photocycle intermediates of photoactive yellow protein
    Biochemistry 40, 14336-14343 (2001)
  2. Y. Imamoto, Y. Shirahige, F. Tokunaga, T. Kinoshita, K. Yoshihara, M. Kataoka
    Low-temperature Fourier transform infrared spectroscopy of photoactive yellow protein
    Biochemistry 40, 8997-9004 (2001)
  3. H. Katou, M. Hoshino, H. Kamikubo, C. A. Batt, Y. Goto
    Native-like β-hairpin retained in the cold-denatured state of bovine β-lactoglobulin
    J. Mol. Biol. 310, 471-484 (2001)
  4. M. Harigai, S. Yasuda, Y. Imamoto, K. Yoshihara, F. Tokunaga , M. Kataoka
    Amino acids in the N-terminal region regulate the photocycle of photoactive yellow protein
    J. Biochem. 130, 51-56 (2001)
  5. R. Kato, M. Kataoka, H. Kamikubo, S. Kuramitsu
    Direct observation of three conformations of MutS protein regulated by adenine nucleotides
    J. Mol. Biol. 309, 227-238 (2001)
  6. Y. Imamoto, M. Kataoka, F. Tokunaga, T. Asahi, H. Masuhara
    Primary photoreaction of photoactive yellow protein studied by subpicosecond-nanosecond spectroscopy
    Biochemistry 40, 6047-6052 (2001)
  7. Y. Imamoto, H. Koshimizu, K. Mihara, O. Hisatomi, T. Mizukami, K. Tsujimoto, M. Kataoka, F. Tokunaga
    Roles of amino acid residues near the chromophore of photoactive yellow protein
    Biochemistry 40, 4679-4685 (2001)
  8. S. Ohishi, N. Shimizu, K. Mihara, Y. Imamoto, M. Kataoka
    Light induces destabilization of photoactive yellow protein
    Biochemistry 40, 2854-2859 (2001)
  9. N. Bondar, R. Daniel, J. L. Finney, S. Fischer, M. Kataoka, A. Petrescu, J. C. Smith
    Protein folding and dynamics - New insights from computer simulation and scattering experiments
    J. Phys. Soc. Japan. 70 Suppl. A, 392-395 (2001)
  10. S. Yuzawa, M. Yokochi, H. Hatanaka, K. Ogura, M. Kataoka, K. Miura, V. Mandiyan, J. Schlessinger, F. Inagaki
    Solution structure of Grb2 reveals extensive flexibility necessary for target recognition
    J. Mol. Biol. 306, 527-537 (2001)
  11. H. Kandori, Y. Yamazaki, Y. Shichida, J. Raap, J. Lugtenburg, M. Belenky, J. Herzfeld
    Tight Asp-85–Thr-89 association during the pump switch of bacteriorhodopsin
    Proc. Natl. Acad. Sci. USA 98, 1571-1576 (2001)
  12. 片岡幹雄
    生物らしい分子の姿・形を見る
    In "新・生物物理の最前線（ブルーバックス）"（日本生物物理学会編）第3章，pp. 57-84，講談社，東京 (2001)

2000年

  1. T. Oka, N. Yagi, T. Fujisawa, H. Kamikubo, F. Tokunaga, M. Kataoka
    Time-resolved X-ray diffraction reveals multiple conformations in the M-N transition of the bacteriorhodopsin photocycle
    Proc. Natl. Acad. Sci. USA 97, 14278-14282 (2000)
  2. Y. Imamoto, M. Kataoka, F. Tokunaga, K. Palczewski
    Lingt-induced conformational changes of rhodopsin probed by fluorescent Alexa594 immobilized on the cytoplasmic surface
    Biochemistry 39, 15225-15253 (2000)
  3. Y. Kawase, M. Tanio, A. Kira, S. Yamaguchi, S. Tuzi, A. Naito, M. Kataoka, J. K. Lanyi, R. Needleman, H. Saito
    Alteration of conformation and dynamics of bacteriorhodopsin induced by protonation of Asp 85 and deprotonation of Schiff base as studied by 13C NMR
    Biochemistry 39, 14472-14480 (2000)
  4. R. Kato, M. Kataoka, T. Mikawa, R. Masui, N. Nakagawa, H. Kamikubo, S. Kuramitsu
    Observation of RecA protein monomer by small angle X-ray scattering with synchrotron radiation
    FEBS Lett. 482, 159-162 (2000)
  5. K. Takeshita, N. Hirota, Y. Imamoto,M. Kataoka, F. Tokunaga, M. Terazima
    Temperature-dependent volume change of initial step of the photoreaction of photoactive yellow protein (PYP) studied by transient grating
    J. Am. Chem. Soc. 122, 8524-8528 (2000)
  6. M. Kataoka, H. Kamikubo
    Structures of photointermediates and their implication to the proton pump mechanism
    Biochim. Biophys. Acta 1460, 166-176 (2000)
  7. N. Mataga, H. Chosrowjan, H. Shibata, Y. Imamoto, F. Tokunaga
    Effects of modification of protein nanospace structure and change of temperature on the femtosecond to picosecond fluorescence dynamics of photoactive yellow protein
    J. Phys. Chem. B 104, 5191-5199 (2000)
  8. T. Nishino, H. Iwasaki, M. Kataoka, M. Ariyoshi, T. Fujita, H. Shinagawa, K. Morikawa
    Modulation of RuvB function by the mobile domain III of the Holliday junction recognition protein RuvA
    J. Mol. Biol. 298, 407-416 (2000)
  9. N. Mataga, H. Chosrowjan, H. Shibata, Y. Imamoto, F. Tokunaga, F. Tanaka
    Femtosecond fluorescence studies on ultrafast reaction dynamics of photoactive proteins
    J. Lumin. 87-89, 821-823 (2000)
  10. D. Hamada, F. Chiti, J. I. Guijarro, M. Kataoka, N. Taddei, C. M. Dobson
    Evidence for the nature of rate-limiting steps in protein folding by analysis of the effects of 2,2,2-trifluoroethanol
    Nature Struct. Biol. 7, 58-61 (2000)
  11. 片岡幹雄
    ダイナミクスが機能をもたらす
    In "生物の働きを生み出すタンパク質のかたち"（第14回｢大学と科学｣公開シンポジウム組織委員会編） pp. 119-144, クバプロ, 東京 (2000)
  12. 片岡幹雄
    機能中のタンパク質の振る舞い
    In "夢の光ー放射光が拓く生命の神秘"（安岡則武, 木原裕編）pp. 76-81, 共立出版, 東京 (2000)

1999年

  1. Y. Imamoto, T. Hirano, H. Imai, H. Kandor, A. Maeda, T. Yoshizawa, M. Groesbeek, J. Lugtenburg, Y. Shichida
    Effect of anion binding on iodopsin studied by low-temperature Fourier transform infrared spectroscopy
    Biochemistry 38, 11749-11754 (1999)
  2. M. Kataoka, H. Kamikubo, J. Yunoki, F. Tokunaga, T. Kanaya, Y. Izumi, K. Shibata
    Low energy dynamics of globular proteins studied by inelastic neutron scattering
    J. Phys. Chem. Solids 60, 1285-1289 (1999)
  3. M. Kataoka, M. Ferrand, A.V. Goupil-Lamy, H. Kamikubo, J. Yunoki, T. Oka, J.C. Smith
    Dynamical and structural modifications of staphylococcal nuclease on C-terminal truncation
    Physica B 266, 20-26 (1999)
  4. Y. O. Kamatari, S. Ohji, T. Konno, Y. Seki, K. Soda, M. Kataoka, K. Akasaka
    The compact and expanded denatured conformations of apomyoglobin in methanol-water solvent
    Protein Sci. 8, 873-882 (1999)
  5. T. Oka, H. Kamikubo, F. Tokunaga, J. K. Lanyi, R. Needleman, M. Kataoka
    Conformational change of helix G in the bacteriorhodopsin photocycle: Investigation with heavy atom labeling and X-ray diffraction
    Biophys. J. 76, 1018-1023 (1999)
  6. S. Nomura, N. Kajimura, K. Matoba, T. Miyata, R. Ortenberg, M. Mevarech, H. Kamikubo, M. Kataoka, Y. Harada
    Ordered structure formation of bacteriorhodopsin-hDHFR in a plasma membrane
    Langmuir 15, 214-220 (1999)
  7. M. Kataoka, J. Yunoki, H. Takahara
    Effects of deletions or insertions on the structure, stability and function of Staphylococcal nuclease
    In "Old and New Views of Protein Folding" (Eds. K. Kuwajima , M. Arai), pp. 205-214, Elsevier Science, Amsterdam (1999)
  8. 片岡幹雄
    中性子準弾性・非弾性散乱による蛋白質動力学の研究
    波紋 9, 19-23 (1999)
  9. 岡俊彦, 上久保裕生, 片岡幹雄
    バクテリオロドプシンの光反応中間体の構造とプロトンポンプ機構
    放射光 12, 184-193 (1999)
  10. 片岡幹雄
    生体高分子の小角散乱
    In "結晶解析ハンドブック"（日本結晶学会編）pp. 588-594, 共立出版, 東京 (1999)

1998年

  1. Y. Hagihara, M. Hoshino, D. Hamada, M. Kataoka, Y. Goto
    Chain-like conformation of heat-denatured ribonuclease A and cytochrome c as evidenced by solution X-ray scattering
    Folding & Design 3, 195-201 (1998)
  2. Y. O. Kamatari, T. Konno, M. Kataoka, K. Akasaka
    The methanol-induced transition and the expanded helical conformation in hen lysozyme
    Protein Sci. 7, 681-688 (1998)
  3. A. Yamauchi, T. Yomo, F. Tanaka, I. D. Prijambada, S. Ohhashi, K. Yamamoto, Y. Shima, K. Ogasahara, K. Yutani, M. Kataoka, I. Urabe
    Characterization of soluble artificial proteins with random sequences
    FEBS Lett. 421, 147-151 (1998)
  4. J. C. Smith, A. V. Goupil-Lamy, M. Kataoka, J. Yunoki, A.-J. Petrescu, V. Receveur, P. Calmettes, D. Durand
    Motions in native and denatured proteins
    Physica B 241-243, 1110-1114 (1998)
  5. 片岡幹雄
    中性子散乱による蛋白質動力学の研究
    大阪大学低温センターだより 102, 8-14 (1998)