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  1. T. Satoh, C. Song, T. Zhu, T. Toshimori, K. Murata, Y. Hayashi, H. Kamikubo, T. Uchihashi, K. Kato
    Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT
    Scientific Reports 7,12142(2017)
  2. K. Yonezawa, N. Shimizu, K. Kurihara, Y. Yamazaki, H. Kamikubo, M. Kataoka
    Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal
    Scientific Reports 7,9361(2017)
  3. M. Nawata, H. Tsutsumi, Y Kobayashi, S. Unzai, S. Mine, T. Nakamura, K. Uegaki, H. Kamikubo, M. Kataoka, D. Hamada
    Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI
    FEBS J 284(18),3114-3127(2017)
  4. R. Kawatani, Y. Nishiyama, H. Kamikubo, K. Kakiuchi, H. Ajiro
    Aggregation Control by Multi-stimuli-Responsive Poly(N-vinylamide) Derivatives in Aqueous System
    Nanoscale Research Letters 2017,12:461(2017)


  1. H. Kuramochi, S. Takeuchi, K. Yonezawa, H. Kamikubo, M. Kataoka, T.Tahara
    Probing the early stages of photoreception in photoactive yellow protein with ultrafast time-domain Raman spectroscopy
    Nature Chemistry 2017,10.1038/nchem.2717(2017)
  2. J. K. Endow, A. G. Rocha, A. J. Baldwin, R. L. Roston, T. Yamaguchi, H. Kamikubo, K. Inoue
    Polyglycine acts as a rejection signal for protein transport at the chloroplast envelope
    PLoS ONE 11(12),e0167802 (2016)
  3. Y. Yoshimura, N. A.Oktaviani, K.Yonezawa, H.Kamikubo, F. A. A. Mulder
    Unambiguous Determination of the Ionization State of a Photoactive Protein Active Site Arginine in Solution by NMR Spectroscopy
    Angewandte Chemie 56,239-242(2017)
  4. L. Zhang, H. Kondo, H. Kamikubo, M. Kataoka, W. Sakamoto
    VIPP1 has a disordered C-terminal tail necessary for protecting photosynthetic membranes against stress in Arabidopsis
    Plant Physiology 171, 1983-1995(2016)


  1. Y. Kanematsu, H. Kamikubo, M. Kataoka, M. Tachikawa
    Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein
    Computational and Structural Biotechnology Journal 14,16-19(2015)
  2. S. Nagao, M. Ueda, H. Osuka, H. Komori, H. Kamikubo, M. Kataoka, Y. Higuchi, S. Hirota
    Domain-Swapped Dimer of Pseudomonas aeruginosa Cytochrome c551: Structural Insights into Domain Swapping of Cytochrome c Family Proteins.
    PLoS One 10(4), e0123653 (2015)


  1. Y. Yamazaki, T. Nagata, A. Terakita, H. Kandori, Y. Shichida, Y. Imamoto
    Intramolecular Interactions That Induce Helical Rearrangement upon Rhodopsin Activation : LIGHT-INDUCED STRUCTURAL CHANGES IN METARHODOPSIN IIa PROBED BY CYSTEINE S-H STRETCHING VIBRATIONS?
    J. Biol. Chem. 289,13792-13800(2014)
  2. Y. Kobayashi, H. Tsutsumi, T. Abe, K. Ikeda, Y. Tashiro, S. Unzai, H. Kamikubo, M. Kataoka, H. Hiroaki, D. Hamada
    Decreased amyloidogenicity by mutational modulation of surface properties of the immunoglobulin light chain BRE variable domain
    Biochemistry 53(31), 5162-5173(2014)
  3. M. Deshpande, P. Parui, H. Kamikubo, M. Yamanaka, S. Nagao, H. Komori, M. Kataoka, Y. Higuchi, S. Hirota
    Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer
    Biochemistry 53(28), 4696-4703(2014)
  4. D. Novitasari, H. Kamikubo, Y. Yamazaki, M. Yamaguchi, M. Kataoka
    Excited-State Proton Transfer in Fluorescent Photoactive Yellow Protein Containing 7-Hydroxycoumarin
    Advanced Materials Research 896, 85-88 (2014)


  1. Y. Yamazaki, T. Nagata, A. Terakita, H. Kandori, Y. Shichida, Y. Imamoto
    Mapping of the local environmental changes in proteins by cysteine scanning
    Biophysics 10, 1-7(2013)
  2. PP. Parui, MS. Deshpande, S. Nagao, H. Kamikubo, H. Komori, Y. Higuchi, M. Kataoka, S. Hirota?
    Formation of oligomeric cytochrome c during folding by intermolecular hydrophobic interaction between N- and C-terminal α-helices
    Biochemistry 52, 8732-8744(2013)
  3. M. Hamaguchi, H. Kamikubo, K. N. Suzuki, Y. Hagihara, I. Yanagihara, I. Sakata, M. Kataoka, D. Hamada
    Structural Basis of α-Catenin Recognition by EspB from Enterohaemorrhagic E. coli Based on Hybrid Strategy Using Low-Resolution Structural and Protein Dissection
    PLoS One 8, e71618 (2013)
  4. N. Inoue, D. Hamada, H. Kamikubo, K. Hirata, M. Kataoka, M. Yamamoto, M. Ikawa, M. Okabe, Y. Hagihara
    Molecular dissection of IZUMO1, a sperm protein essential for sperm-egg fusion
    Development 140, 3221-3229 (2013)
  5. J. Yuasa, T. Ohno, H. Tsumatori, R. Shiba, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
    Fingerprint signatures of lanthanide circularly polarized luminescence from proteins covalently labeled by a β-diketonate europium(III) chelate
    Chem. Comm. 49, 4604-4606 (2013)
  6. J. Uewaki, H. Kamikubo, J. Kurita, N. Hiroguchi, H. Moriuchi, M. Yoshida, M. Kataoka, N. Utsunomiya-Tate, S. Tate
    Preferential domain orientation of HMGB2 determined by weak intramolecular interactions mediated by the interdomain linker
    Chem. Phys. 419, 212-223 (2013)
  7. Y. Kita, H. Kamikubo, M. Kataoka, M. Tachikawa
    Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with multi-component density functional theory
    Chem. Phys.419, 50-53 (2013)
  8. T. J. Pool, N. A. Oktaviani, H. Kamikubo, M. Kataoka, F. A. A. Mulder
    1H,?13C, and?15N resonance assignment of photoactive yellow protein
    Biomol. NMR Assign. 7, 97-100 (2013)
  9. W. Chung, K. Nobusawa, H. Kamikubo, M. Kataoka, M. Fujiki, M. Naito
    Time-resolved observation of chiral-index-selective wrapping on single-walled carbon nanotube with non-aromatic polysilane
    J. Am. Chem. Soc. 135, 2374-2383 (2013)
  10. 上久保裕生,片岡幹雄
    化学 68, 74-75 (2013)
  11. 上久保裕生
    日本結晶学会誌 55, 52-57 (2013)


  1. S. Hirota, M. Ueda, Y. Hayashi, S. Nagao, H. Kamikubo, M. Kataoka
    Maintenance of the secondary structure of horse cytochrome?c?during the conversion process of monomers to oligomers by addition of ethanol
    J. Biochem. 152, 521-529 (2012)
  2. F. Schotte, H. S. Cho, V. R. I. Kaila, H. Kamikubo, N. Dashdorj, E. R. Henry, T. J. Graber, R. Henning, M. Wulff, G. Hummer, M. Kataoka, P. A. Anfinrud
    Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography
    Proc. Natl. Acad. Sci. USA 109, 19256-19261 (2012)
  3. H. Makyio, M. Ohgi, T. Takei, S. Takahashi, H. Takatsu, Y. Katoh, A. Hanai, T. Ueda, Y. Kanaho, Y. Xie, H.-W. Shin, H. Kamikubo, M. Kataoka, M. Kawasaki, R. Kato, S. Wakatsuki, K. Nakayama
    Structural basis for Arf6?MKLP1 complex formation on the Flemming body responsible for cytokinesis
    EMBO J. 31, 2590-2603 (2012)
  4. N. A. Oktaviani, T. J. Pool, H. Kamikubo, J. Slager, R. M. Sceek, M. Kataoka, F. A. A. Mulder
    Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect?13C NMR spectroscopy
    Biophys. J. 102, 579-586 (2012)


  1. M. Mizuno, H. Kamikubo, M. Kataoka, Y. Mizutani
    Changes in the hydrogen-bond network around the chromophore of photoactive yellow protein in the ground and excited states
    J. Phys. Chem. B 115, 9306-9310 (2011)
  2. R. Shiba, M. Umeyama, S. Tsukasa, H. Kamikubo, Y. Yamazaki, M. Yamaguchi, M. Iwakura, M. Kataoka
    Systematic alanine insertion reveals the essential regions that encode structure formation and activity of dihydrofolate reductase
    Biophysics 7, 1-10 (2011)
  3. A. Tanaka, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
    Size-controlled aggregation of cube-shaped EuS nanocrystals with magneto-optic properties in solution
    Langmuir 27, 104-108 (2011)


  1. M. Yamaguchi, T. Ikeda, K. Yamamoto, A. Matsushita, M. Tatsuno, Y. Minami, M. Tani, M. Hangyo
    Discrimination of inflammable liquids by two-dimensional mapping of complex refractive indices in the terahertz range
    Jpn. J. Appl. Phys. 49, 102401 (2010)
  2. S. Hirota, Y. Hattori, S. Nagao, M. Taketa, H. Komori, H. Kamikubo, Z. Wang, I. Takahashi, S. Negi, Y. Sugiura, M. Kataoka, Y. Higuchi
    Cytochrome c polymerization by successive domain swapping at the C-terminal helix
    Proc. Natl. Acad. Sci. USA 107, 12854-12859 (2010)
  3. M. Tani, T. Koizumi, H. Sumikura, M. Yamaguchi, K. Yamamoto, M. Hangyo
    Time-domain coherent anti-stokes Raman scattering signal detection for terahertz vibrational spectroscopy using chirped femtosecond pulses
    Appl. Phys. Express 3, 072401 (2010)
  4. A. Tanaka, H. Kamikubo, Y. Doi, Y. Hinatsu, M. Kataoka, T. Kawai, Y. Hasegawa
    Self-assembly and enhanced magnetic properties of three-dimensional superlattice structures composed of cube-shaped EuS nanocrystals
    Chem. Mater. 22, 1776-1781 (2010)
  5. S. Kato, H. Kamikubo, S. Hirano, Y. Yamazaki, M. Kataoka
    Nonlocal interaction responsible for the tertiary structural formation of Staphylococcal nuclease
    Biophys. J. 98, 678-786 (2010)
  6. H. Nakagawa, H. Kamikubo, M. Kataoka
    Effect of conformational states on protein dynamical transition
    Biochim. Biophys. Acta 1804, 27-33 (2010)
  7. 上久保裕生,山口繁生,片岡幹雄
    RADIOISOTOPES 59, 289-297 (2010)


  1. A. Tanaka, Y. Hasegawa, H. Kamikubo, M. Kataoka, T. Kawai
    Self-aggregation of magnetic semiconductor EuS nanocrystals
    Thin Solid Films 518, 870-872 (2009)
  2. S. Yamaguchi, H. Kamikubo, K. Kurihara, R. Kuroki, N. Niimura, N. Shimizu, Y. Yamazaki, M. Kataoka
    Low-barrier hydrogen bond in photoactive yellow protein
    Proc. Natl. Acad. Sci. USA 106, 440-444 (2009)
  3. M. Kataoka, H. Kamikubo
    Structure of the photointermediate of photoactive yellow protein and the propagataion mechanism of structural change
    In?"Water and Biomolecules"?(Eds. K. Kuwajima, Y. Goto, F. Hirata, M. Kataoka , M. Terazima), pp. 137-148, Springer-Verlag, Berlin (2009)


  1. M. Inoue, H. Kamikubo, M. Kataoka, R. Kato, T. Yoshimori, S. Wakatsuki, M. Kawasaki
    Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
    Traffic 9, 2180-2189 (2008)
  2. M. Onitsuka, H. Kamikubo, Y. Yamazaki, M. Kataoka
    Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutants
    Proteins: Struct. Funct. Bioinformat. 72, 837-847 (2008)
  3. H. Kamikubo, T. Koyama, M. Hayashi, K. Shirai, Y. Yamazaki, Y. Imamoto, M. Kataoka
    The photoreaction of the photoactive yellow protein domain in the light sensor histidine kinase Ppr is influenced by the C-terminal domains
    Photochem. Photobiol. 84, 895-902 (2008)
  4. Y. Yamazaki, H. Fukuzumi, H. Kamikubo, M. Kataoka
    Role of the N-terminal region in the function of the photosynthetic bacterium transcription regulator PpsR
    Photochem. Photobiol. 84, 839-844 (2008)
  5. S. Yousef, H. Kamikubo, M. Kataoka, R. Kato, S. Wakatsuki
    Miranda cargo-binding domain forms an elongated coiled-coil homodimer in solution: Implications for asymmetric cell division in?Drosophila
    Protein Sci. 17, 908-917 (2008)
  6. Y. Imamoto, S. Tatsumi, M. Harigai, Y. Yamazaki, H. Kamikubo, M. Kataoka
    Diverse Roles of Glycine Residues Conserved in Photoactive Yellow Proteins
    Biophys. J. 94, 3620-3628 (2008)


  1. Y. Shimomura, H. Kamikubo, Y. Nishi, T. Masako, M. Kataoka, Y. Kobayashi, K. Fukuyama, Y. Takahashi
    Characterization and crystallization of an IscU-type scaffold protein with bound [2Fe 2S] cluster from the Hyperthermophile,?Aquifex aeolicus
    J. Biochem. 142, 577-586 (2007)
  2. L. Chavas, S. Torii, H. Kamikubo, M. Kawasaki, K. Ihara, R. Kato, M. Kataoka, T. Izumi, S. Wakatsuki
    Structure of the small GTPase Rab27b shows an unexpected swapped dimer
    Acta Cryst. D 63, 769-779 (2007)
  3. M. Inoue, T. Shiba, K. Ihara, Y. Yamada, S. Hirano, H. Kamikubo, M. Kataoka, M. Kawasaki, R. Kato, K. Nakayama, S. Wakatsuki
    Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1
    Traffic 8, 904-913 (2007)
  4. S. Kawai, T. Nakashima, K. Atsumi, T. Sakai, M. Harigai, Y. Imamoto, H. Kamikubo, M. Kataoka, T. Kawai
    Novel photochromic molecules based on 4,5-dithienyl thiazole with fast thermal bleaching rate
    Chem. Mater. 19, 3479-3483 (2007)
  5. K. Shirai, Y. Yamazaki, H. Kamikubo, Y. Imamoto, M. Kataoka
    Attempt to simplify the amino-acid sequence of photoactive yellow protein with a set of simple rules
    Proteins: Struct. Funct. Bioinformat. 67, 821-833 (2007)
  6. H. Kamikubo, N. Shimizu, M. Harigai, Y. Yamazaki, Y. Imamoto, M. Kataoka
    Characterization of the solution structure of the M intermediate of photoactive yellow protein using high-angle solution x-ray scattering
    Biophys. J. 92, 3633-3642 (2007)
  7. S. Yamaguchi, H. Kamikubo, N. Shimizu, Y. Yamazaki, Y. Imamoto, M. Kataoka
    Preparation of large crystal of photoactive yellow protein for neutron and high resolution crystal structure analysis
    Photochem. Photobiol. 83, 336-338 (2007)
  8. T. Morishita, M. Harigai, Y. Yamazaki, H. Kamikubo, M. Kataoka, Y. Imamoto
    Array of aromatic amino acid side chains located near the chromophore of photoactive yellow protein
    Photochem. Photobiol. 83, 280-285 (2007)


  1. H. Nakagawa, A. Tokuhisa, H. Kamikubo, Y. Joti, A. Kitao, M. Kataoka
    Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations
    Mat. Sci. Eng. A 442, 356-360(2006)
  2. S. Ohnishi, H. Kamikubo, M. Onitsuka, M. Kataoka, D. Shortle
    Conformational preference of polyglycine in solution to elongated structure
    J. Am. Chem. Soc. 128, 16338-16344 (2006)
  3. N. Shimizu, H. Kamikubo, Y. Yamazaki, Y. Imamoto, M. Kataoka
    The crystal structure of the R52Q mutant demonstrates a role for R52 in chromophore pKa regulation in photoactive yellow protein
    Biochemistry 45, 3542-3547 (2006)
  4. H. Tsuihiji, Y. Yamazaki, H. Kamikubo, Y. Imamoto, M. Kataoka
    Cloning and characterization of nif structural and regulatory genes in the purple sulfur bacterium,Halorhodospira halophila
    J. Biosci. Bioeng. 101, 263-270 (2006)
  5. N. Shimizu, Y. Imamoto, M. Harigai, H. Kamikubo, Y. Yamazaki, M. Kataoka
    pH-Dependent equilibrium between long-lived near-UV intermediates of photoactive yellow protein
    J. Biol. Chem. 281, 4318-4325 (2006)


  1. K. Ito, H. Kamikubo, N. Yagi, Y. Amemiya
    Correction method and software for image distortion and nonuniform response in charge-coupled device-based X-ray detectors utilizing X-ray image intensifier
    Jpn. J. Appl. Phys. 40, 8684-8691(2005)
  2. J. S. Khan, Y. Imamoto, Y. Yamazaki, M. Kataoka, F. Tokunaga, M. Terazima
    A biosensor in the time domain based on the diffusion coefficient measurement: Intermolecular interaction of an intermediate of photoactive yellow protein
    Anal. Chem. 77, 6625-6629 (2005)
  3. H. Kamikubo, M. Kataoka
    Can the low-resolution structures of photointermediates of bacteriorhodopsin explain their crystal structures??
    Biophys. J. 88, 1925-1931 (2005)
  4. S. Hirano, H. Kamikubo, Y. Yamazaki, M. Kataoka
    Elucidation of information encoded in tryptophan 140 of staphylococcal nuclease
    Proteins: Struct. Funct. Bioinformat. 58, 271-277 (2005)


  1. H. Nakagawa, H. Kamikubo, I. Tsukushi, T. Kanaya, M. Kataoka
    Protein dynamical heterogeneity derived from neutron incoherent elastic scattering
    J. Phys. Soc. Jpn. 73, 491-495 (2004)
  2. H. Chosrowjan, N. Mataga, S. Taniguchi, M. Unno, H. Kamikubo, Y. Imamoto, M. Kataoka
    Time and frequency domain investigations on ultrafast photoreaction dynamics of photoactive yellow protein
    レーザー研究 32, 114-120 (2004)
  3. 上久保裕生,片岡幹雄
    In?"バイオ高性能機器・新技術利用マニュアル(蛋白質核酸酵素 増刊 49)"?pp. 1681-1686 (2004)


  1. M. Harigai, Y. Imamoto, H. Kamikubo, Y. Yamazaki, M. Kataoka
    Role of an N-terminal loop in the secondary structural change of photoactive yellow protein
    Biochemistry 42, 13893-13900 (2003)
  2. Y. Imamoto, C. Tamura, H. Kamikubo, M. Kataoka
    Concentration-dependent tetramerization of bovine visual arrestin
    Biophys. J. 85, 1186-1195 (2003)
  3. M. Kataoka, H. Kamikubo, H. Nakagawa, S. F. Parker, J. C. Smith
    Neutron inelastic scattering as a high-resolution vibrational spectroscopy: New tool for the study of protein dynamics
    Spectroscopy 17, 529-535 (2003)
  4. E. Mano, H. Kamikubo, Y. Imamoto, M. Kataoka
    Comparison of the photochemical reaction of photoactive yellow protein in crystal with reaction in solution
    Spectroscopy 17, 345-353 (2003)
  5. 中川洋,上久保裕生,片岡幹雄
    波紋 13, 116-119 (2003)


  1. Y. Imamoto, M. Harigai, N. Shimizu, H. Kamikubo, M. Kataoka
    Structure and photoreaction of photoactive yellow protein
    J. Photosci. 9, 126-129 (2002)
  2. Y. Imamoto, H. Kamikubo, M. Harigai, N. Shimizu, M. Kataoka
    Light-induced global conformational change of photoactive yellow protein in solution
    Biochemistry 41, 13595-13601 (2002)
  3. S. Hirano, K. Mihara, H. Kamikubo, Y. Yamazaki, Y. Imamoto, M. Kataoka
    Role of C-terminal region of Staphylococcal nuclease for foldability, stability and activity
    Proteins: Struct. Funct. Genet. 49, 255-265 (2002)
  4. N. Shimizu, H. Kamikubo, K. Mihara, Y. Imamoto, M. Kataoka
    Effect of organic anions on the photoreaction of photoactive yellow protein
    J. Biochem. 132, 257-263 (2002)
  5. 上久保裕生,片岡幹雄
    応用光学 2, 1-6 (2002)


  1. H. Katou, M. Hoshino, H. Kamikubo, C. A. Batt, Y. Goto
    Native-like β-hairpin retained in the cold-denatured state of bovine β-lactoglobulin
    J. Mol. Biol. 310, 471-484 (2001)
  2. R. Kato, M. Kataoka, H. Kamikubo, S. Kuramitsu
    Direct observation of three conformations of MutS protein regulated by adenine nucleotides
    J. Mol. Biol. 309, 227-238 (2001)
  3. H. Kandori, Y. Yamazaki, Y. Shichida, J. Raap, J. Lugtenburg, M. Belenky, J. Herzfeld
    Tight Asp-85?Thr-89 association during the pump switch of bacteriorhodopsin
    Proc. Natl. Acad. Sci. USA?98, 1571-1576 (2001)


  1. T. Oka, N. Yagi, T. Fujisawa, H. Kamikubo, F. Tokunaga, M. Kataoka
    Time-resolved X-ray diffraction reveals multiple conformations in the M-N transition of the bacteriorhodopsin photocycle
    Proc. Natl. Acad. Sci. USA 97, 14278-14282 (2000)
  2. R. Kato, M. Kataoka, T. Mikawa, R. Masui, N. Nakagawa, H. Kamikubo, S. Kuramitsu
    Observation of RecA protein monomer by small angle X-ray scattering with synchrotron radiation
    FEBS Lett. 482, 159-162 (2000)
  3. M. Kataoka, H. Kamikubo
    Structures of photointermediates and their implication to the proton pump mechanism
    Biochim. Biophys. Acta 1460, 166-176 (2000)


  1. M. Kataoka, H. Kamikubo, J. Yunoki, F. Tokunaga, T. Kanaya, Y. Izumi, K. Shibata
    Low energy dynamics of globular proteins studied by inelastic neutron scattering
    J. Phys. Chem. Solids 60, 1285-1289 (1999)
  2. M. Kataoka, M. Ferrand, A.V. Goupil-Lamy, H. Kamikubo, J. Yunoki, T. Oka, J.C. Smith
    Dynamical and structural modifications of staphylococcal nuclease on C-terminal truncation
    Physica B 266, 20-26 (1999)
  3. T. Oka, H. Kamikubo, F. Tokunaga, J. K. Lanyi, R. Needleman, M. Kataoka
    Conformational change of helix G in the bacteriorhodopsin photocycle: Investigation with heavy atom labeling and X-ray diffraction
    Biophys. J. 76, 1018-1023 (1999)
  4. S. Nomura, N. Kajimura, K. Matoba, T. Miyata, R. Ortenberg, M. Mevarech, H. Kamikubo, M. Kataoka, Y. Harada
    Ordered structure formation of bacteriorhodopsin-hDHFR in a plasma membrane
    Langmuir 15, 214-220 (1999)
  5. 岡俊彦, 上久保裕生, 片岡幹雄
    放射光 12, 184-193 (1999)