1. Tao Tang, Xun Liu, Yapeng Yuan, R. Kiya, Tianlong Zhang, Yang Yang, S. Suetsugu, Y. Yamazaki, N. Ota, K. Yamamoto, H. Kamikubo, Y. Tanaka, Ming Li, Y. Hosokawa, Yaxiaer Yalikun
   Machine learning-based impedance system for real-time recognition of antibiotic-susceptible bacteria with parallel cytometry
   Sensors and Actuators B: Chemical 2022 Oct 30 . doi: 10.1016/j.snb.2022.132698 . PMID: 35642562
2. Tao Tang, Xun Liu, Yapeng Yuan, Tianlong Zhang, R. Kiya, Yang Yang, Y. Yamazaki, H. Kamikubo, Y. Tanaka, Ming Li, Y.Hosokawa, Yaxiaer Yalikun
   Parallel Impedance Cytometry for Real-Time Screening of Bacterial Single Cells from Nano- to Microscale
   ACS sensor 2022　Oct 25 doi:10.1021/acssensors.2c013.
3. Tianlong Zhang, Hangrui Liu, K. Okano, Tao Tang, K. Inoue, Y. Yamazaki, H. Kamikubo, Amy K Cain, Y. Tanaka, David W Inglis, Y. Hosokawa, Yaxiaer Yalikun, Ming Li
   Shape-based separation of drug-treated Escherichia coli using viscoelastic microfluidics
   Lab on a Chip 22(15) (2022):2801-2809. doi: 10.1039/d2lc00339b. PMID: 35642562

2021

1. S. Akiyama, H. Kamikubo
   Beyond multi-disciplinary and cross-scale analyses of the cyanobacterial circadian clock system
   Biophysics and Physicobiology 18(2021) 267-268 doi: 10.2142/biophysico.bppb-v18.031. eCollection 2021
2. Y. Takase, Y. Yamazaki, Y. Hayashi, S. Toma-Fukai, H. Kamikubo
   Structure elements can be predicted using the contact Volume among protein residues
   Biophysics and Physicobiology 18(2021),:50-59.DOI:10.2142/biophysico.bppb-v18.006
3. S. Toma-Fukai, T. Shimizu
   Structural Diversity of Ubiquitin E3 Ligase
   Molecules (Basel, Switzerland)>2021 Nov 4 DOI:10.3390/molecules2621668
4. H. Nanaura, H. Kawamukai, A. Fujiwara, T. Uehara, Y. Aiba, M. Nakanishi, T. Shiota,M. Hibino, Pattama Wiriyasermkul,S. Kikuchi, R. Nagata, M. Matsubayashi, Y. Shinkai, T. Niwa, T. Mannen, N. Morikawa, N. Iguchi, T. Kiriyama, K. Morishima, R. Inoue, M. Sugiyama,T. Oda, N. Kodera, S. Toma-Fukai, M. Sato, H. Taguchi, S. Nagamori, O. Shoji, K. Ishimori, H. Matsumura, K. Sugie, T. Saio, T. Yoshizawa, E. Mori
   C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers
   Nature Communications10.1038/s41467-021-25560-0
5. Suhyang Kim,Y. Nakasone, A. Takakado, Y. Yamazaki, H. Kamikubo, M. Terazima
   A unique photochromic UV-A sensor protein, Rc-PYP, interacting with the PYP-binding protein
   Physical Chemistry Chemical Physics 23(33)2021 Sep 7;:17813-17825.DOI:10.1039/d1cp02731j
6. H. Kuramochi, S. Takeuchi, H. Kamikubo, M. Kataoka, T. Tahara
   Skeletal Structure of the Chromophore of Photoactive Yellow Protein in the Excited State Investigated by Ultraviolet Femtosecond Stimulated Raman Spectroscopy
   The Journal of Physical Chemistry BDOI:10.1021/acs.jpcb.1c02828

2020

1. Suhyang Kim, Y. Nakasone, A. Takakado, Y. Yamazaki, H. Kamikubo, M. Terazima
   Wavelength dependent photoreaction of PYP from Rhodobacter capsulatus
   BiochemistryDOI:10.1021/acs.biochem.Oc00821
2. Jia-Siang Sum, Y. Yamazaki, K. Yoshida, K. Yonezawa, Y. Hayashi, M. Kataoka, H. Kamikubo
   Spectroscopic and structural characteristics of a dual-light sensor protein, PYP-phytochrome related protein
   Biophysics and Physicobiology,Vol.17, pp.103-112 (2020)DOI:org/10.2142/biophysico.BSJ-2020015
3. T. Teratani, K. Tomita,S. Toma-Fukai, Y. Nakamura, T. Itoh, H. Shimizu, Y. Shiraishi, N. Sugihara, M. Higashiyama, T. Shimizu, I. Inoue, Y. Takenaka, R. Hokari, T. Adachi, T. Shimizu, S. Miura, T. Kanai
   Redox-dependent PPARγ/Tnpo1 complex formation enhances PPARγ nuclear localization and signaling.
   Free radical biology & medicine,doi:10.1074/jbc.RA120.013431
4. S.Toma-Fukai, R. Hibi, T. Naganuma, M. Sakai, S. Saijo, N. Shimizu, M. Matsumoto, T. Shimizu,
   Crystal structure of GCN5 PCAF N-terminal domain reveals atypical ubiquitin ligase structure
   J. Biol. Chem.,doi:10.1016/j.freeradbiomed.2020.06.005
5. T. Nakamura , C. Hashikawa, K. Okabe, Y. Yokote, M. Chirifu, S. Toma-Fukai, N. Nakamura, M. Matsuo, M. Kamikariya, Y. Okamoto, J. Gohda, T. Akiyama, K. Semba, S. Ikemizu, M. Otsuka, J. Inoue , Y. Yamagata
   Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity
   Sci Rep. 10(1), 5152,doi: 10.1038/s41598-020-61972-6

2019

1. M. Kataoka, H. Kamikubo
   Mechanism of the light-driven proton pump of bacteriorhodopsin based on the consistency principle
   Biophysics and Physicobiology 16,(2019),DOI:org/10.2142/biophysico.16.0_274
2. H. Kuramochi, S. Takeuchi, H. Kamikubo, M. Kataoka, T. Tahara
   Fifth-order time-domain Raman spectroscopy of photoactive yellow protein for visualizing vibrational coupling in its excited state
   Science Advances 5(6),4490(2019),DOI:10.1126/sciadv.aau4490
3. T. Miyamoto, Y. Hayashi, K. Yoshida, H. Watanabe,T. Uchihashi, K.Yonezawa, N. Shimizu, H. Kamikubo, S. Hirota
   Construction of a Quadrangular Tetramer and a Cage-like Hexamer from Three-Helix Bundle-Linked Fusion Proteins
   ACS Synthetic Biology 8(5),1112-1120(2019),DOI:10.1021/acssynbio.9b00019
4. M. Shahrizal, Y. Daimon, Y.Tanaka, Y. Hayashi, S. Nakayama, S. Iwaki, S. Narita, H. Kamikubo, Y. Akiyama, T. Tsukazaki
   Structural Basis for the Function of the β-Barrel Assembly-Enhancing Protease BepA
   Journal of Molecular Biology 431(3),625-635(2019), DOI:10.1016/j.jmb.2018.11.024

2018

1. 上久保裕生
   連続滴定X線溶液散乱測定を志向したμ流路型自動サンプリングシステムの開発
   Journal of Computer Chemistry Japan 17,57-64(2018),DOI: org/10.2477/jccj.2018-0008

2017

1. M. Yamaguchi, E. Ohta, T. Muto, T. Watanabe, T. Hohsaka, Y. Yamazaki, H. Kamikubo, M. Kataoka
   Statistical description of the denatured structure of a single protein, staphylococcal nuclease, by FRET analysis
   Biophysical Reviews 10,145-152(2017),DOI: 10.1007/s12551-017-0334-y
2. P. Bernadó, N. Shimizu, G. Zaccai, H. Kamikubo, M. Sugiyama
   Solution scattering approaches to dynamical ordering in biomolecular systems
   Biochimica et Biophysica Acta-General Subjects,1862,253-274,DOI:10.1016/j.bbagen.2017.10.015
3. T. Satoh, C. Song, T. Zhu, T. Toshimori, K. Murata, Y. Hayashi, H. Kamikubo, T. Uchihashi, K. Kato
   Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT
   Scientific Reports 7,12142(2017),DOI:10.1038/10.1038/s41598-017-12283-w
4. K. Yonezawa, N. Shimizu, K. Kurihara, Y. Yamazaki, H. Kamikubo, M. Kataoka
   Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal
   Scientific Reports 7,9361(2017),DOI:10.1038/s41598-017-09718-9
5. M. Nawata, H. Tsutsumi, Y Kobayashi, S. Unzai, S. Mine, T. Nakamura, K. Uegaki, H. Kamikubo, M. Kataoka, D. Hamada
   Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI
   FEBS J 284(18),3114-3127(2017),DOI:10.1111/febs.14181
6. R. Kawatani, Y. Nishiyama, H. Kamikubo, K. Kakiuchi, H. Ajiro
   Aggregation Control by Multi-stimuli-Responsive Poly(N-vinylamide) Derivatives in Aqueous System
   Nanoscale Research Letters 2017,12,461(2017)DOI:10.1186/s11671-017-2221-7

2016

1. H. Kuramochi, S. Takeuchi, K. Yonezawa, H. Kamikubo, M. Kataoka, T.Tahara
   Probing the early stages of photoreception in photoactive yellow protein with ultrafast time-domain Raman spectroscopy
   Nature Chemistry 2017,10.1038/nchem.2717(2017)
2. J. K. Endow, A. G. Rocha, A. J. Baldwin, R. L. Roston, T. Yamaguchi, H. Kamikubo, K. Inoue
   Polyglycine acts as a rejection signal for protein transport at the chloroplast envelope
   PLoS ONE 11(12),e0167802(2016)
3. Y. Yoshimura, N. A.Oktaviani, K.Yonezawa, H.Kamikubo, F. A. A. Mulder
   Unambiguous Determination of the Ionization State of a Photoactive Protein Active Site Arginine in Solution by NMR Spectroscopy
   Angewandte Chemie 56,239-242(2016)
4. L. Zhang, H. Kondo, H. Kamikubo, M. Kataoka, W. Sakamoto
   VIPP1 has a disordered C-terminal tail necessary for protecting photosynthetic membranes against stress in Arabidopsis
   Plant Physiology 171, 1983-1995(2016)

2015

1. Y. Kanematsu, H. Kamikubo, M. Kataoka, M. Tachikawa
   Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein
   Computational and Structural Biotechnology Journal 14,16-19(2015)
2. S. Nagao, M. Ueda, H. Osuka, H. Komori, H. Kamikubo, M. Kataoka, Y. Higuchi, S. Hirota
   Domain-Swapped Dimer of Pseudomonas aeruginosa Cytochrome c551: Structural Insights into Domain Swapping of Cytochrome c Family Proteins.
   PLoS One 10(4), e0123653 (2015)

2014

1. Y. Kobayashi, H. Tsutsumi, T. Abe, K. Ikeda, Y. Tashiro, S. Unzai, H. Kamikubo, M. Kataoka, H. Hiroaki, D. Hamada
   Decreased amyloidogenicity by mutational modulation of surface properties of the immunoglobulin light chain BRE variable domain
   Biochemistry 53(31), 5162-5173(2014)
2. M. Deshpande, P. Parui, H. Kamikubo, M. Yamanaka, S. Nagao, H. Komori, M. Kataoka, Y. Higuchi, S. Hirota
   Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer
   Biochemistry 53(28), 4696-4703(2014)
3. Y. Yamazaki, T. Nagata, A. Terakita, H. Kandori, Y. Shichida, Y. Imamoto
   Intramolecular Interactions That Induce Helical Rearrangement upon Rhodopsin Activation : LIGHT-INDUCED STRUCTURAL CHANGES IN METARHODOPSIN IIa PROBED BY CYSTEINE S-H STRETCHING VIBRATIONS?
   J. Biol. Chem. 289,13792-13800(2014)
4. D. Novitasari, H. Kamikubo, Y. Yamazaki, M. Yamaguchi, M. Kataoka
   Excited-State Proton Transfer in Fluorescent Photoactive Yellow Protein Containing 7-Hydroxycoumarin
   Advanced Materials Research 896, 85-88 (2014)

2013

1. Y. Yamazaki, T. Nagata, A. Terakita, H. Kandori, Y. Shichida, Y. Imamoto
   Mapping of the local environmental changes in proteins by cysteine scanning
   Biophysics 10, 1-7(2013)
2. PP. Parui, MS. Deshpande, S. Nagao, H. Kamikubo, H. Komori, Y. Higuchi, M. Kataoka, S. Hirota?
   Formation of oligomeric cytochrome c during folding by intermolecular hydrophobic interaction between N- and C-terminal α-helices
   Biochemistry 52, 8732-8744(2013)
3. M. Hamaguchi, H. Kamikubo, K. N. Suzuki, Y. Hagihara, I. Yanagihara, I. Sakata, M. Kataoka, D. Hamada
   Structural Basis of α-Catenin Recognition by EspB from Enterohaemorrhagic E. coli Based on Hybrid Strategy Using Low-Resolution Structural and Protein Dissection
   PLoS One 8, e71618 (2013)
4. N. Inoue, D. Hamada, H. Kamikubo, K. Hirata, M. Kataoka, M. Yamamoto, M. Ikawa, M. Okabe, Y. Hagihara
   Molecular dissection of IZUMO1, a sperm protein essential for sperm-egg fusion
   Development 140, 3221-3229 (2013)
5. J. Uewaki, H. Kamikubo, J. Kurita, N. Hiroguchi, H. Moriuchi, M. Yoshida, M. Kataoka, N. Utsunomiya-Tate, S. Tate
   Preferential domain orientation of HMGB2 determined by weak intramolecular interactions mediated by the interdomain linker
   Chem. Phys. 419, 212-223 (2013)
6. Y. Kita, H. Kamikubo, M. Kataoka, M. Tachikawa
   Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with multi-component density functional theory
   Chem. Phys.419, 50-53 (2013)
7. T. J. Pool, N. A. Oktaviani, H. Kamikubo, M. Kataoka, F. A. A. Mulder
   1H,?13C, and?15N resonance assignment of photoactive yellow protein
   Biomol. NMR Assign. 7, 97-100 (2013)
8. 上久保裕生，片岡幹雄
   働いているタンパク質の構造を実時間で見た！－次世代構造生物科学への期待
   化学 68, 74-75 (2013)
9. 上久保裕生
   結晶構造解析と溶液散乱測定から見た光センサー蛋白質の局所構造と全体構造
   日本結晶学会誌 55, 52-57 (2013)

2012

1. J. Yuasa, T. Ohno, H. Tsumatori, R. Shiba, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
   Fingerprint signatures of lanthanide circularly polarized luminescence from proteins covalently labeled by a β-diketonate europium(III) chelate
   Chem. Comm. 49, 4604-4606 (2013)
2. W. Chung, K. Nobusawa, H. Kamikubo, M. Kataoka, M. Fujiki, M. Naito
   Time-resolved observation of chiral-index-selective wrapping on single-walled carbon nanotube with non-aromatic polysilane
   J. Am. Chem. Soc. 135, 2374-2383 (2013)
3. F. Schotte, H. S. Cho, V. R. I. Kaila, H. Kamikubo, N. Dashdorj, E. R. Henry, T. J. Graber, R. Henning, M. Wulff, G. Hummer, M. Kataoka, P. A. Anfinrud
   Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography
   Proc. Natl. Acad. Sci. USA 109, 19256-19261 (2012)
4. S. Hirota, M. Ueda, Y. Hayashi, S. Nagao, H. Kamikubo, M. Kataoka
   Maintenance of the secondary structure of horse cytochrome?c?during the conversion process of monomers to oligomers by addition of ethanol
   J. Biochem. 152, 521-529 (2012)
5. H. Makyio, M. Ohgi, T. Takei, S. Takahashi, H. Takatsu, Y. Katoh, A. Hanai, T. Ueda, Y. Kanaho, Y. Xie, H.-W. Shin, H. Kamikubo, M. Kataoka, M. Kawasaki, R. Kato, S. Wakatsuki, K. Nakayama
   Structural basis for Arf6?MKLP1 complex formation on the Flemming body responsible for cytokinesis
   EMBO J. 31, 2590-2603 (2012)
6. T. J. Pool, N. A. Oktaviani, H. Kamikubo, M. Kataoka, F. A. A. Mulder
   1H,?13C, and?15N resonance assignment of photoactive yellow protein
   Biomol. NMR Assign. 7, 97-100 (2012)
7. N. A. Oktaviani, T. J. Pool, H. Kamikubo, J. Slager, R. M. Sceek, M. Kataoka, F. A. A. Mulder
   Comprehensive determination of protein tyrosine pKa values for photoactive yellow protein using indirect?13C NMR spectroscopy
   Biophys. J. 102, 579-586 (2012)

2011

1. M. Mizuno, H. Kamikubo, M. Kataoka, Y. Mizutani
   Changes in the hydrogen-bond network around the chromophore of photoactive yellow protein in the ground and excited states
   J. Phys. Chem. B 115, 9306-9310 (2011)
2. R. Shiba, M. Umeyama, S. Tsukasa, H. Kamikubo, Y. Yamazaki, M. Yamaguchi, M. Iwakura, M. Kataoka
   Systematic alanine insertion reveals the essential regions that encode structure formation and activity of dihydrofolate reductase
   Biophysics 7, 1-10 (2011)
3. A. Tanaka, H. Kamikubo, M. Kataoka, Y. Hasegawa, T. Kawai
   Size-controlled aggregation of cube-shaped EuS nanocrystals with magneto-optic properties in solution
   Langmuir 27, 104-108 (2011)

2010

1. M. Yamaguchi, T. Ikeda, K. Yamamoto, A. Matsushita, M. Tatsuno, Y. Minami, M. Tani, M. Hangyo
   Discrimination of inflammable liquids by two-dimensional mapping of complex refractive indices in the terahertz range
   Jpn. J. Appl. Phys. 49, 102401 (2010)
2. S. Hirota, Y. Hattori, S. Nagao, M. Taketa, H. Komori, H. Kamikubo, Z. Wang, I. Takahashi, S. Negi, Y. Sugiura, M. Kataoka, Y. Higuchi
   Cytochrome c polymerization by successive domain swapping at the C-terminal helix
   Proc. Natl. Acad. Sci. USA 107, 12854-12859 (2010)
3. M. Tani, T. Koizumi, H. Sumikura, M. Yamaguchi, K. Yamamoto, M. Hangyo
   Time-domain coherent anti-stokes Raman scattering signal detection for terahertz vibrational spectroscopy using chirped femtosecond pulses
   Appl. Phys. Express 3, 072401 (2010)
4. A. Tanaka, H. Kamikubo, Y. Doi, Y. Hinatsu, M. Kataoka, T. Kawai, Y. Hasegawa
   Self-assembly and enhanced magnetic properties of three-dimensional superlattice structures composed of cube-shaped EuS nanocrystals
   Chem. Mater. 22, 1776-1781 (2010)
5. S. Kato, H. Kamikubo, S. Hirano, Y. Yamazaki, M. Kataoka
   Nonlocal interaction responsible for the tertiary structural formation of Staphylococcal nuclease
   Biophys. J. 98, 678-786 (2010)
6. H. Nakagawa, H. Kamikubo, M. Kataoka
   Effect of conformational states on protein dynamical transition
   Biochim. Biophys. Acta 1804, 27-33 (2010)
7. 上久保裕生，山口繁生，片岡幹雄
   フォトアクティブイェロープロテインの中性子結晶構造解析
   RADIOISOTOPES 59, 289-297 (2010)

2009

1. A. Tanaka, Y. Hasegawa, H. Kamikubo, M. Kataoka, T. Kawai
   Self-aggregation of magnetic semiconductor EuS nanocrystals
   Thin Solid Films 518, 870-872 (2009)
2. S. Yamaguchi, H. Kamikubo, K. Kurihara, R. Kuroki, N. Niimura, N. Shimizu, Y. Yamazaki, M. Kataoka
   Low-barrier hydrogen bond in photoactive yellow protein
   Proc. Natl. Acad. Sci. USA 106, 440-444 (2009)
3. M. Kataoka, H. Kamikubo
   Structure of the photointermediate of photoactive yellow protein and the propagataion mechanism of structural change
   In?"Water and Biomolecules"?(Eds. K. Kuwajima, Y. Goto, F. Hirata, M. Kataoka , M. Terazima), pp. 137-148, Springer-Verlag, Berlin (2009)

2008

1. M. Inoue, H. Kamikubo, M. Kataoka, R. Kato, T. Yoshimori, S. Wakatsuki, M. Kawasaki
   Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
   Traffic 9, 2180-2189 (2008)
2. M. Onitsuka, H. Kamikubo, Y. Yamazaki, M. Kataoka
   Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutants
   Proteins: Struct. Funct. Bioinformat. 72, 837-847 (2008)
3. H. Kamikubo, T. Koyama, M. Hayashi, K. Shirai, Y. Yamazaki, Y. Imamoto, M. Kataoka
   The photoreaction of the photoactive yellow protein domain in the light sensor histidine kinase Ppr is influenced by the C-terminal domains
   Photochem. Photobiol. 84, 895-902 (2008)
4. Y. Yamazaki, H. Fukuzumi, H. Kamikubo, M. Kataoka
   Role of the N-terminal region in the function of the photosynthetic bacterium transcription regulator PpsR
   Photochem. Photobiol. 84, 839-844 (2008)
5. S. Yousef, H. Kamikubo, M. Kataoka, R. Kato, S. Wakatsuki
   Miranda cargo-binding domain forms an elongated coiled-coil homodimer in solution: Implications for asymmetric cell division in?Drosophila
   Protein Sci. 17, 908-917 (2008)
6. Y. Imamoto, S. Tatsumi, M. Harigai, Y. Yamazaki, H. Kamikubo, M. Kataoka
   Diverse Roles of Glycine Residues Conserved in Photoactive Yellow Proteins
   Biophys. J. 94, 3620-3628 (2008)

2007

1. Y. Shimomura, H. Kamikubo, Y. Nishi, T. Masako, M. Kataoka, Y. Kobayashi, K. Fukuyama, Y. Takahashi
   Characterization and crystallization of an IscU-type scaffold protein with bound [2Fe 2S] cluster from the Hyperthermophile,?Aquifex aeolicus
   J. Biochem. 142, 577-586 (2007)
2. L. Chavas, S. Torii, H. Kamikubo, M. Kawasaki, K. Ihara, R. Kato, M. Kataoka, T. Izumi, S. Wakatsuki
   Structure of the small GTPase Rab27b shows an unexpected swapped dimer
   Acta Cryst. D 63, 769-779 (2007)
3. M. Inoue, T. Shiba, K. Ihara, Y. Yamada, S. Hirano, H. Kamikubo, M. Kataoka, M. Kawasaki, R. Kato, K. Nakayama, S. Wakatsuki
   Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1
   Traffic 8, 904-913 (2007)
4. S. Kawai, T. Nakashima, K. Atsumi, T. Sakai, M. Harigai, Y. Imamoto, H. Kamikubo, M. Kataoka, T. Kawai
   Novel photochromic molecules based on 4,5-dithienyl thiazole with fast thermal bleaching rate
   Chem. Mater. 19, 3479-3483 (2007)
5. K. Shirai, Y. Yamazaki, H. Kamikubo, Y. Imamoto, M. Kataoka
   Attempt to simplify the amino-acid sequence of photoactive yellow protein with a set of simple rules
   Proteins: Struct. Funct. Bioinformat. 67, 821-833 (2007)
6. H. Kamikubo, N. Shimizu, M. Harigai, Y. Yamazaki, Y. Imamoto, M. Kataoka
   Characterization of the solution structure of the M intermediate of photoactive yellow protein using high-angle solution x-ray scattering
   Biophys. J. 92, 3633-3642 (2007)
7. S. Yamaguchi, H. Kamikubo, N. Shimizu, Y. Yamazaki, Y. Imamoto, M. Kataoka
   Preparation of large crystal of photoactive yellow protein for neutron and high resolution crystal structure analysis
   Photochem. Photobiol. 83, 336-338 (2007)
8. T. Morishita, M. Harigai, Y. Yamazaki, H. Kamikubo, M. Kataoka, Y. Imamoto
   Array of aromatic amino acid side chains located near the chromophore of photoactive yellow protein
   Photochem. Photobiol. 83, 280-285 (2007)

2006

1. H. Nakagawa, A. Tokuhisa, H. Kamikubo, Y. Joti, A. Kitao, M. Kataoka
   Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations
   Mat. Sci. Eng. A 442, 356-360(2006)
2. S. Ohnishi, H. Kamikubo, M. Onitsuka, M. Kataoka, D. Shortle
   Conformational preference of polyglycine in solution to elongated structure
   J. Am. Chem. Soc. 128, 16338-16344 (2006)
3. N. Shimizu, H. Kamikubo, Y. Yamazaki, Y. Imamoto, M. Kataoka
   The crystal structure of the R52Q mutant demonstrates a role for R52 in chromophore pKa regulation in photoactive yellow protein
   Biochemistry 45, 3542-3547 (2006)
4. H. Tsuihiji, Y. Yamazaki, H. Kamikubo, Y. Imamoto, M. Kataoka
   Cloning and characterization of nif structural and regulatory genes in the purple sulfur bacterium,Halorhodospira halophila
   J. Biosci. Bioeng. 101, 263-270 (2006)
5. N. Shimizu, Y. Imamoto, M. Harigai, H. Kamikubo, Y. Yamazaki, M. Kataoka
   pH-Dependent equilibrium between long-lived near-UV intermediates of photoactive yellow protein
   J. Biol. Chem. 281, 4318-4325 (2006)

2005

1. K. Ito, H. Kamikubo, N. Yagi, Y. Amemiya
   Correction method and software for image distortion and nonuniform response in charge-coupled device-based X-ray detectors utilizing X-ray image intensifier
   Jpn. J. Appl. Phys. 40, 8684-8691(2005)
2. J. S. Khan, Y. Imamoto, Y. Yamazaki, M. Kataoka, F. Tokunaga, M. Terazima
   A biosensor in the time domain based on the diffusion coefficient measurement: Intermolecular interaction of an intermediate of photoactive yellow protein
   Anal. Chem. 77, 6625-6629 (2005)
3. H. Kamikubo, M. Kataoka
   Can the low-resolution structures of photointermediates of bacteriorhodopsin explain their crystal structures??
   Biophys. J. 88, 1925-1931 (2005)
4. S. Hirano, H. Kamikubo, Y. Yamazaki, M. Kataoka
   Elucidation of information encoded in tryptophan 140 of staphylococcal nuclease
   Proteins: Struct. Funct. Bioinformat. 58, 271-277 (2005)

2004

1. H. Nakagawa, H. Kamikubo, I. Tsukushi, T. Kanaya, M. Kataoka
   Protein dynamical heterogeneity derived from neutron incoherent elastic scattering
   J. Phys. Soc. Jpn. 73, 491-495 (2004)
2. H. Chosrowjan, N. Mataga, S. Taniguchi, M. Unno, H. Kamikubo, Y. Imamoto, M. Kataoka
   Time and frequency domain investigations on ultrafast photoreaction dynamics of photoactive yellow protein
   レーザー研究 32, 114-120 (2004)
3. 上久保裕生，片岡幹雄
   中性子散乱
   In?"バイオ高性能機器・新技術利用マニュアル（蛋白質核酸酵素　増刊 49）"?pp. 1681-1686 (2004)

2003

1. M. Harigai, Y. Imamoto, H. Kamikubo, Y. Yamazaki, M. Kataoka
   Role of an N-terminal loop in the secondary structural change of photoactive yellow protein
   Biochemistry 42, 13893-13900 (2003)
2. Y. Imamoto, C. Tamura, H. Kamikubo, M. Kataoka
   Concentration-dependent tetramerization of bovine visual arrestin
   Biophys. J. 85, 1186-1195 (2003)
3. M. Kataoka, H. Kamikubo, H. Nakagawa, S. F. Parker, J. C. Smith
   Neutron inelastic scattering as a high-resolution vibrational spectroscopy: New tool for the study of protein dynamics
   Spectroscopy 17, 529-535 (2003)
4. E. Mano, H. Kamikubo, Y. Imamoto, M. Kataoka
   Comparison of the photochemical reaction of photoactive yellow protein in crystal with reaction in solution
   Spectroscopy 17, 345-353 (2003)
5. 中川洋，上久保裕生，片岡幹雄
   タンパク質動力学研究における中性子とX線の役割
   波紋 13, 116-119 (2003)

2002

1. Y. Imamoto, M. Harigai, N. Shimizu, H. Kamikubo, M. Kataoka
   Structure and photoreaction of photoactive yellow protein
   J. Photosci. 9, 126-129 (2002)
2. Y. Imamoto, H. Kamikubo, M. Harigai, N. Shimizu, M. Kataoka
   Light-induced global conformational change of photoactive yellow protein in solution
   Biochemistry 41, 13595-13601 (2002)
3. S. Hirano, K. Mihara, H. Kamikubo, Y. Yamazaki, Y. Imamoto, M. Kataoka
   Role of C-terminal region of Staphylococcal nuclease for foldability, stability and activity
   Proteins: Struct. Funct. Genet. 49, 255-265 (2002)
4. N. Shimizu, H. Kamikubo, K. Mihara, Y. Imamoto, M. Kataoka
   Effect of organic anions on the photoreaction of photoactive yellow protein
   J. Biochem. 132, 257-263 (2002)
5. 上久保裕生，片岡幹雄
   光駆動プロトンポンプの一方向プロトン輸送機構
   応用光学 2, 1-6 (2002)

2001

1. H. Katou, M. Hoshino, H. Kamikubo, C. A. Batt, Y. Goto
   Native-like β-hairpin retained in the cold-denatured state of bovine β-lactoglobulin
   J. Mol. Biol. 310, 471-484 (2001)
2. R. Kato, M. Kataoka, H. Kamikubo, S. Kuramitsu
   Direct observation of three conformations of MutS protein regulated by adenine nucleotides
   J. Mol. Biol. 309, 227-238 (2001)
3. H. Kandori, Y. Yamazaki, Y. Shichida, J. Raap, J. Lugtenburg, M. Belenky, J. Herzfeld
   Tight Asp-85?Thr-89 association during the pump switch of bacteriorhodopsin
   Proc. Natl. Acad. Sci. USA?98, 1571-1576 (2001)

2000

1. T. Oka, N. Yagi, T. Fujisawa, H. Kamikubo, F. Tokunaga, M. Kataoka
   Time-resolved X-ray diffraction reveals multiple conformations in the M-N transition of the bacteriorhodopsin photocycle
   Proc. Natl. Acad. Sci. USA 97, 14278-14282 (2000)
2. R. Kato, M. Kataoka, T. Mikawa, R. Masui, N. Nakagawa, H. Kamikubo, S. Kuramitsu
   Observation of RecA protein monomer by small angle X-ray scattering with synchrotron radiation
   FEBS Lett. 482, 159-162 (2000)
3. M. Kataoka, H. Kamikubo
   Structures of photointermediates and their implication to the proton pump mechanism
   Biochim. Biophys. Acta 1460, 166-176 (2000)

1999

1. M. Kataoka, H. Kamikubo, J. Yunoki, F. Tokunaga, T. Kanaya, Y. Izumi, K. Shibata
   Low energy dynamics of globular proteins studied by inelastic neutron scattering
   J. Phys. Chem. Solids 60, 1285-1289 (1999)
2. M. Kataoka, M. Ferrand, A.V. Goupil-Lamy, H. Kamikubo, J. Yunoki, T. Oka, J.C. Smith
   Dynamical and structural modifications of staphylococcal nuclease on C-terminal truncation
   Physica B 266, 20-26 (1999)
3. T. Oka, H. Kamikubo, F. Tokunaga, J. K. Lanyi, R. Needleman, M. Kataoka
   Conformational change of helix G in the bacteriorhodopsin photocycle: Investigation with heavy atom labeling and X-ray diffraction
   Biophys. J. 76, 1018-1023 (1999)
4. S. Nomura, N. Kajimura, K. Matoba, T. Miyata, R. Ortenberg, M. Mevarech, H. Kamikubo, M. Kataoka, Y. Harada
   Ordered structure formation of bacteriorhodopsin-hDHFR in a plasma membrane
   Langmuir 15, 214-220 (1999)
5. 岡俊彦, 上久保裕生, 片岡幹雄
   バクテリオロドプシンの光反応中間体の構造とプロトンポンプ機構
   放射光 12, 184-193 (1999)

1998